# Guided Tour of Java OceanAtlas

## Calculate Parameters

Oceanographers use parameters calculated from the data to aid interpretation. Java OceanAtlas provides means to calculate a wide range of these derived variables. Calculated parameters are stored in RAM, and are not normally saved on disk (though they can be), so they are usually re-calculated each time the data set is opened. This is usually not a problem because parameter calculations in OceanAtlas are completed easily and quickly. Selecting 'Parameters...' from the Calculations menu brings up the Parameter Calculations dialog box (Figure 8). Figure 8 Java OceanAtlas Parameter Calculations dialog box.

Here we will calculate the two parameters used most often by physical oceanographers: potential temperature and a density-related parameter called 'sigma-0' or 'sigma-theta'.

Potential temperature, written as '' and therefore often called 'theta' by oceanographers (and abbreviated as THTA internally in Java OceanAtlas) is the temperature a seawater sample would have if raised adiabatically from its collection level ('in situ') to the sea surface. (In fully correct parlance this is 'potential temperature with respect to zero decibars'.) The reason we use potential temperature is that if a seawater parcel descends into the deep ocean - perhaps because it entered from a peripheral region where it obtained a higher density than the ambient water in the region it entered - it is slightly heated by compression (by a little less than 0.1'C/1000 db increase in pressure). To properly compare temperatures of seawater samples from different pressures we should reference their temperatures to the same isobar. Zero decibars is the level of choice, though for density calculations potential temperature is calculated (automatically in Java OceanAtlas) with respect to the reference pressure chosen for the density calculation.

At this time oceanographers do not have generally available a methodology for directly measuring density in situ with the accuracy and precision required for ocean circulation and mixing studies. So for many years oceanographers have calculated density based on seawater properties. Oceanographers are interested in the density of seawater for a number of reasons. For example, it is an important consideration in ocean mixing because it is easier to mix water along a surface of constant density (an 'isopycnal') rather than across it. [Consider the difference in work: To a first approximation it takes no work to mix along an isopycnal whereas it does require work to mix across one.] And oceanographers have learned that on a rotating Earth the relative motion of one seawater layer with respect to another sets up small-but-important slopes of isopycnal surfaces with respect to isobars, meaning that by studying the slopes of isopycnal surfaces (and other related dynamic surfaces) we can infer much about ocean circulation.

The density of seawater is a nonlinear function of its pressure, temperature, and salinity. To properly compare seawater samples one should reference their densities to the same isobar. Zero decibars is the most common choice, but due to nonlinearities in the equation of state for seawater it is also common to use deeper reference levels, i.e. reference levels appropriate to the situations under examination. The density of a seawater sample with PRES = 0 db, TEMP = 0'C, and SALT = 35 would be 1028.106 kg m-3. Oceanographers subtract '1000' from density as a form of short hand and call this 'sigma' units. When the reference level is zero decibars this becomes 'sigma-0' or sometimes 'sigma-theta' (two names for the same term; SIG0 internally in Java OceanAtlas). Thus our '0, 0, 35' sample - which is already at the reference pressure of 0 decibars - has sigma-0 = 28.106.

• Select 'Parameters...' from the Calculations menu. Click on the boxes for theta and sigma-0 (this is shown in Figure 8), then click 'OK'. The computer will rapidly complete the calculations. When it is done you will notice that the Data Window now shows these two parameters, because these have now been calculated and temporarily stored for the section.